PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G143600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 361aa    MW: 39766.1 Da    PI: 5.2573
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G143600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.24e-102843241055
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r+RR++iN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Prupe.8G143600.1.p 284 RKRREKINERLRVLQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 324
                         9******************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.5274323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-14274339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-12279333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-11280329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.45E-11283328No hitNo description
PfamPF000102.5E-7284324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MYTAEEVDFM AQLLGNFSSS NHPSGTSSMR VPEAFWPGDE SLTMNMSGNH EGSHYSSETS  60
ISDCSNRILF PTSSNESYYL SSDSHPMLVT SNSSMSIDFG SGDGIRNLNS YLIQVNDQCL  120
NQEPSEGNAE EYGGNQPEAV ALEKRRYDMA VQEPAMDDKS NTSKASMKRT QSAENNVNVL  180
SLIINSMWVQ MNKRNIKSKK SLQIITSNNE EDGNAGPNRQ SSSSCCSGDD SNIASHFHEN  240
SQELSPGCTS TSSLSPKEAK ALNLSGKSRA RRGSAIDPQS LYARKRREKI NERLRVLQNL  300
VPNGTKVDIS TMLEEAVHYV KFLQLQIKLL SSDDMWMYAP ICYNGMDLGL DLKLTSPKQS  360
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1283288RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008236358.10.0PREDICTED: transcription factor bHLH84
TrEMBLM5VGS40.0M5VGS4_PRUPE; Uncharacterized protein
STRINGPOPTR_0009s09210.11e-100(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.12e-59ROOT HAIR DEFECTIVE 6-LIKE 2